STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d2bTBC1 domain family, member 2B. (1006 aa)    
Predicted Functional Partners:
RAB7A
RAB7A, member RAS oncogene family.
    
 0.675
LOC103465062
RAB7a, member RAS oncogene family.
    
 0.675
ENSPREP00000027150
Uncharacterized protein.
    
  0.644
nrde2
NRDE-2, necessary for RNA interference, domain containing.
    
 
 0.526
RAB9A
RAB9A, member RAS oncogene family.
    
 0.490
ENSPREP00000010233
RAB9B, member RAS oncogene family.
    
 0.490
armc5
Armadillo repeat containing 5.
    
 0.490
ENSPREP00000018481
Uncharacterized protein.
    
 0.490
mrpl11
Mitochondrial ribosomal protein L11.
      
 0.471
ENSPREP00000033529
Uncharacterized protein.
   
   0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.