LOC103463627 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103463627

Family with sequence similarity 78 member Bb. (279 aa)

Predicted Functional Partners:

wdr43

0.575

utp20

0.540

utp4

0.539

utp15

0.520

ENSPREP00000008920

0.519

LOC103475843

0.502

cask

0.502

rps6

0.494

nop58

0.493

utp6

0.490

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008920	LOC103463627	ENSPREP00000008920	ENSPREP00000013730	Uncharacterized protein.	Family with sequence similarity 78 member Bb.	0.519
ENSPREP00000008920	nop58	ENSPREP00000008920	ENSPREP00000020896	Uncharacterized protein.	NOP58 ribonucleoprotein homolog (yeast).	0.999
ENSPREP00000008920	rps6	ENSPREP00000008920	ENSPREP00000006473	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.961
ENSPREP00000008920	utp15	ENSPREP00000008920	ENSPREP00000015417	Uncharacterized protein.	UTP15 small subunit processome component.	0.999
ENSPREP00000008920	utp20	ENSPREP00000008920	ENSPREP00000019708	Uncharacterized protein.	UTP20 small subunit processome component.	0.999
ENSPREP00000008920	utp4	ENSPREP00000008920	ENSPREP00000028259	Uncharacterized protein.	UTP4 small subunit processome component.	0.999
ENSPREP00000008920	utp6	ENSPREP00000008920	ENSPREP00000019389	Uncharacterized protein.	UTP6 small subunit processome component.	0.999
ENSPREP00000008920	wdr43	ENSPREP00000008920	ENSPREP00000007191	Uncharacterized protein.	WD repeat domain 43.	0.999
LOC103463627	ENSPREP00000008920	ENSPREP00000013730	ENSPREP00000008920	Family with sequence similarity 78 member Bb.	Uncharacterized protein.	0.519
LOC103463627	LOC103475843	ENSPREP00000013730	ENSPREP00000013706	Family with sequence similarity 78 member Bb.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.502
LOC103463627	cask	ENSPREP00000013730	ENSPREP00000030734	Family with sequence similarity 78 member Bb.	Uncharacterized protein; Belongs to the MAGUK family.	0.502
LOC103463627	nop58	ENSPREP00000013730	ENSPREP00000020896	Family with sequence similarity 78 member Bb.	NOP58 ribonucleoprotein homolog (yeast).	0.493
LOC103463627	rps6	ENSPREP00000013730	ENSPREP00000006473	Family with sequence similarity 78 member Bb.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.494
LOC103463627	utp15	ENSPREP00000013730	ENSPREP00000015417	Family with sequence similarity 78 member Bb.	UTP15 small subunit processome component.	0.520
LOC103463627	utp20	ENSPREP00000013730	ENSPREP00000019708	Family with sequence similarity 78 member Bb.	UTP20 small subunit processome component.	0.540
LOC103463627	utp4	ENSPREP00000013730	ENSPREP00000028259	Family with sequence similarity 78 member Bb.	UTP4 small subunit processome component.	0.539
LOC103463627	utp6	ENSPREP00000013730	ENSPREP00000019389	Family with sequence similarity 78 member Bb.	UTP6 small subunit processome component.	0.490
LOC103463627	wdr43	ENSPREP00000013730	ENSPREP00000007191	Family with sequence similarity 78 member Bb.	WD repeat domain 43.	0.575
LOC103475843	LOC103463627	ENSPREP00000013706	ENSPREP00000013730	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Family with sequence similarity 78 member Bb.	0.502
LOC103475843	cask	ENSPREP00000013706	ENSPREP00000030734	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the MAGUK family.	0.761