STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbck1RanBP-type and C3HC4-type zinc finger containing 1. (506 aa)    
Predicted Functional Partners:
sharpin
SHANK-associated RH domain interacting protein.
   
0.997
LOC103460775
Si:dkey-181m9.8.
   
 0.993
rnf31
Ring finger protein 31.
   
 0.993
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.948
LOC103469572
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.947
LOC103473816
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.947
birc2
Baculoviral IAP repeat containing 2.
    
 0.947
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.928
spata2
Spermatogenesis associated 2.
     
  0.911
LOC103482437
Sharpin and rbck1 related.
  
  
 
0.903
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.