STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll5Tubulin tyrosine ligase-like family, member 5. (1254 aa)    
Predicted Functional Partners:
dcp2
Decapping mRNA 2.
    
 
 0.619
ttll12
Tubulin tyrosine ligase-like family, member 12.
      
0.602
ttll4
Tubulin tyrosine ligase-like family, member 4.
   
  
0.551
ttll11
Tubulin tyrosine ligase-like family, member 11.
   
  
0.550
ttll9
Tubulin tyrosine ligase-like family, member 9.
      
0.549
LOC103464064
ATP/GTP binding protein-like 4.
      
 0.549
dcp1a
Decapping mRNA 1A.
    
 
 0.548
dcp1b
Decapping mRNA 1B.
    
 
 0.548
pibf1
Progesterone immunomodulatory binding factor 1.
    
 
 0.544
atat1
Alpha-tubulin N-acetyltransferase 1; Specifically acetylates 'Lys-40' in alpha-tubulin on the lumenal side of microtubules. Promotes microtubule destabilization and accelerates microtubule dynamics; this activity may be independent of acetylation activity. Acetylates alpha-tubulin with a slow enzymatic rate, due to a catalytic site that is not optimized for acetyl transfer. Enters the microtubule through each end and diffuses quickly throughout the lumen of microtubules. Acetylates only long/old microtubules because of its slow acetylation rate since it does not have time to act on dyn [...]
   
  
 0.541
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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