STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469991Si:dkey-193c22.2. (2420 aa)    
Predicted Functional Partners:
ENSPREP00000020733
Uncharacterized protein.
      
 0.681
COL6A6
Uncharacterized protein.
      
 0.681
LOC103459210
Decorin; May affect the rate of fibrils formation.
     
 0.658
fndc5
Fibronectin type-III domain-containing protein.
      
 0.549
col6a1
Collagen, type VI, alpha 1.
   
  
 0.515
col6a2
Collagen, type VI, alpha 2.
   
  
 0.492
chsy1
Hexosyltransferase.
     
 0.465
hspg2
Heparan sulfate proteoglycan 2.
   
 
0.435
csgalnact2
Hexosyltransferase.
     
 0.431
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 
 0.423
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.