STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZRN4PDZ domain containing ring finger 4. (686 aa)    
Predicted Functional Partners:
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.790
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.769
rps27a
Ribosomal protein S27a.
    
 0.706
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.659
tradd
Tnfrsf1a-associated via death domain.
    
 0.636
LOC103480422
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
   
 0.622
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.622
zfand4
Zinc finger, AN1-type domain 4.
    
 0.613
ecsit
ECSIT signalling integrator.
    
 0.575
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
    
 0.489
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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