STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub2Transmembrane and ubiquitin-like domain containing 2. (330 aa)    
Predicted Functional Partners:
asb16
Ankyrin repeat and SOCS box containing 16.
 
 
   0.593
tmub1
Transmembrane and ubiquitin-like domain containing 1.
  
 
 
0.537
Clg1h6orf120
Zgc:77929.
      
 0.530
LOC103473590
Ring finger protein 170.
    
 
 0.448
LOC103469761
Cholesterol 25-hydroxylase like 3.
    
 
 0.433
LOC103476975
ER lipid raft associated 1.
    
 
 0.433
LOC103461533
Myosin, light chain 1, alkali; skeletal, fast.
   
  
 0.432
tmem259
Transmembrane protein 259.
    
 
 0.423
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.