STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou2f1POU domain protein. (717 aa)    
Predicted Functional Partners:
sfrp2
Secreted frizzled-related protein 2.
      
 0.672
sp1
Sp1 transcription factor.
    
 0.610
znf143
Zinc finger protein 143b.
    
  0.586
snapc4
Uncharacterized protein.
    
  0.573
ENSPREP00000002835
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
    
 0.562
gtf2b
General transcription factor IIB.
    
 0.522
LOC103458088
Small nuclear RNA activating complex, polypeptide 1b.
     
 0.514
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.512
nkrf
NFKB repressing factor.
    
 0.510
tfcp2
Transcription factor CP2.
    
 
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.