STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474154Serine and arginine rich splicing factor 1a. (251 aa)    
Predicted Functional Partners:
srsf10
RRM domain-containing protein.
   
 0.965
nxf1
Zgc:153681.
   
 0.964
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.952
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.951
LOC103464909
SRSF protein kinase 1b.
    
 0.941
srsf2
Serine and arginine rich splicing factor 2a.
   
0.939
srsf7
Serine and arginine rich splicing factor 7b.
   
0.924
ENSPREP00000030553
Serine and arginine rich splicing factor 7a.
   
0.924
magoh
Mago homolog, exon junction complex subunit.
   
 0.907
LOC103464577
RRM domain-containing protein.
   
0.883
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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