STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nischNischarin. (1437 aa)    
Predicted Functional Partners:
pbrm1
Polybromo 1.
      
 0.834
LOC103476688
Atlastin GTPase 2.
      
 0.597
neb
Nebulin.
      
 0.595
Rab42
Si:dkey-34d22.5.
    
 0.567
LOC103469368
Rho family GTPase 2.
    
  0.557
LOC103481273
Rho family GTPase 2.
    
  0.557
epor
Erythropoietin receptor.
      
 0.549
LOC103471979
Stathmin; Belongs to the stathmin family.
      
 0.549
ube2m
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.532
ndfip2
Nedd4 family interacting protein 2.
   
  
 0.487
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.