STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcas2BCAS2 pre-mRNA processing factor. (243 aa)    
Predicted Functional Partners:
plrg1
Pleiotropic regulator 1.
   
 0.999
prpf19
Pre-mRNA processing factor 19.
   
 0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.996
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 
 0.991
prpf8
Pre-mRNA processing factor 8.
    
 
 0.989
ctnnbl1
Catenin, beta like 1.
   
 0.983
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 
 0.974
sf3b4
Splicing factor 3b, subunit 4.
   
   0.973
aqr
Aquarius intron-binding spliceosomal factor.
    
 
 0.972
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.