STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp4Ubiquitin carboxyl-terminal hydrolase. (1000 aa)    
Predicted Functional Partners:
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.844
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.743
ubb
Uncharacterized protein.
    
 0.736
LOC103473189
Uncharacterized protein.
    
 0.717
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.654
rps27a
Ribosomal protein S27a.
    
 0.576
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
0.558
usp30
Ubiquitin carboxyl-terminal hydrolase.
   
 
0.550
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.544
LOC103476317
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
   
 0.544
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.