STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000014560Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (483 aa)    
Predicted Functional Partners:
LOC103468456
TEF transcription factor, PAR bZIP family member b.
   
 
 0.652
atm
Non-specific serine/threonine protein kinase.
     
 0.639
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 
  0.632
LOC103474648
SIX homeobox 5.
   
 
 0.553
LOC103474650
SIX homeobox 9.
   
 
 0.553
six2
SIX homeobox 2a.
   
 
 0.553
six1
SIX homeobox 1a.
   
 
 0.553
six4
SIX homeobox 4a.
   
 
 0.553
hspb7
Heat shock protein family, member 7 (cardiovascular); Belongs to the small heat shock protein (HSP20) family.
   
  
 0.533
tac1
Tachykinin 1.
      
 0.531
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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