LOC103458474 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103458474

Otolith matrix protein. (372 aa)

Predicted Functional Partners:

tra2b

0.681

d2hgdh

0.681

slitrk3

0.681

ENSPREP00000008610

0.670

LOC103479192

0.594

LOC108167061

0.594

Tfr2

0.594

epo

0.594

LOC103456751

0.594

otof

0.553

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000008610	LOC103458474	ENSPREP00000008610	ENSPREP00000014568	RRM domain-containing protein.	Otolith matrix protein.	0.670
ENSPREP00000008610	d2hgdh	ENSPREP00000008610	ENSPREP00000014687	RRM domain-containing protein.	D-2-hydroxyglutarate dehydrogenase.	0.687
ENSPREP00000008610	slitrk3	ENSPREP00000008610	ENSPREP00000025541	RRM domain-containing protein.	SLIT and NTRK-like family, member 3a.	0.695
LOC103456751	LOC103458474	ENSPREP00000033982	ENSPREP00000014568	Transferrin receptor 1b.	Otolith matrix protein.	0.594
LOC103456751	LOC103479192	ENSPREP00000033982	ENSPREP00000004593	Transferrin receptor 1b.	Transferrin receptor 1a.	0.902
LOC103456751	epo	ENSPREP00000033982	ENSPREP00000022483	Transferrin receptor 1b.	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family.	0.402
LOC103458474	ENSPREP00000008610	ENSPREP00000014568	ENSPREP00000008610	Otolith matrix protein.	RRM domain-containing protein.	0.670
LOC103458474	LOC103456751	ENSPREP00000014568	ENSPREP00000033982	Otolith matrix protein.	Transferrin receptor 1b.	0.594
LOC103458474	LOC103479192	ENSPREP00000014568	ENSPREP00000004593	Otolith matrix protein.	Transferrin receptor 1a.	0.594
LOC103458474	LOC108167061	ENSPREP00000014568	ENSPREP00000004617	Otolith matrix protein.	Uncharacterized protein.	0.594
LOC103458474	Tfr2	ENSPREP00000014568	ENSPREP00000014802	Otolith matrix protein.	Uncharacterized protein.	0.594
LOC103458474	d2hgdh	ENSPREP00000014568	ENSPREP00000014687	Otolith matrix protein.	D-2-hydroxyglutarate dehydrogenase.	0.681
LOC103458474	epo	ENSPREP00000014568	ENSPREP00000022483	Otolith matrix protein.	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family.	0.594
LOC103458474	otof	ENSPREP00000014568	ENSPREP00000022565	Otolith matrix protein.	Otoferlin b.	0.553
LOC103458474	slitrk3	ENSPREP00000014568	ENSPREP00000025541	Otolith matrix protein.	SLIT and NTRK-like family, member 3a.	0.681
LOC103458474	tra2b	ENSPREP00000014568	ENSPREP00000013873	Otolith matrix protein.	Transformer 2 beta homolog.	0.681
LOC103479192	LOC103456751	ENSPREP00000004593	ENSPREP00000033982	Transferrin receptor 1a.	Transferrin receptor 1b.	0.902
LOC103479192	LOC103458474	ENSPREP00000004593	ENSPREP00000014568	Transferrin receptor 1a.	Otolith matrix protein.	0.594
LOC103479192	LOC108167061	ENSPREP00000004593	ENSPREP00000004617	Transferrin receptor 1a.	Uncharacterized protein.	0.481
LOC103479192	epo	ENSPREP00000004593	ENSPREP00000022483	Transferrin receptor 1a.	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family.	0.402