creld1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

creld1

Cysteine-rich with EGF-like domains 1b. (406 aa)

Predicted Functional Partners:

cers2

0.645

LOC103475007

0.550

nox5

0.550

LOC103475992

0.532

TOGARAM1

0.470

wdr36

0.445

hyou1

0.435

tada3

0.408

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103475007	LOC103475992	ENSPREP00000021226	ENSPREP00000007163	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Matrix metallopeptidase 14a (membrane-inserted).	0.473
LOC103475007	cers2	ENSPREP00000021226	ENSPREP00000025782	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Ceramide synthase 2b.	0.531
LOC103475007	creld1	ENSPREP00000021226	ENSPREP00000014602	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	Cysteine-rich with EGF-like domains 1b.	0.550
LOC103475007	nox5	ENSPREP00000021226	ENSPREP00000030481	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	NADPH oxidase, EF-hand calcium binding domain 5.	0.475
LOC103475992	LOC103475007	ENSPREP00000007163	ENSPREP00000021226	Matrix metallopeptidase 14a (membrane-inserted).	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.473
LOC103475992	cers2	ENSPREP00000007163	ENSPREP00000025782	Matrix metallopeptidase 14a (membrane-inserted).	Ceramide synthase 2b.	0.525
LOC103475992	creld1	ENSPREP00000007163	ENSPREP00000014602	Matrix metallopeptidase 14a (membrane-inserted).	Cysteine-rich with EGF-like domains 1b.	0.532
LOC103475992	nox5	ENSPREP00000007163	ENSPREP00000030481	Matrix metallopeptidase 14a (membrane-inserted).	NADPH oxidase, EF-hand calcium binding domain 5.	0.477
TOGARAM1	creld1	ENSPREP00000032369	ENSPREP00000014602	TOG array regulator of axonemal microtubules 1.	Cysteine-rich with EGF-like domains 1b.	0.470
cers2	LOC103475007	ENSPREP00000025782	ENSPREP00000021226	Ceramide synthase 2b.	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.531
cers2	LOC103475992	ENSPREP00000025782	ENSPREP00000007163	Ceramide synthase 2b.	Matrix metallopeptidase 14a (membrane-inserted).	0.525
cers2	creld1	ENSPREP00000025782	ENSPREP00000014602	Ceramide synthase 2b.	Cysteine-rich with EGF-like domains 1b.	0.645
cers2	nox5	ENSPREP00000025782	ENSPREP00000030481	Ceramide synthase 2b.	NADPH oxidase, EF-hand calcium binding domain 5.	0.557
creld1	LOC103475007	ENSPREP00000014602	ENSPREP00000021226	Cysteine-rich with EGF-like domains 1b.	Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.	0.550
creld1	LOC103475992	ENSPREP00000014602	ENSPREP00000007163	Cysteine-rich with EGF-like domains 1b.	Matrix metallopeptidase 14a (membrane-inserted).	0.532
creld1	TOGARAM1	ENSPREP00000014602	ENSPREP00000032369	Cysteine-rich with EGF-like domains 1b.	TOG array regulator of axonemal microtubules 1.	0.470
creld1	cers2	ENSPREP00000014602	ENSPREP00000025782	Cysteine-rich with EGF-like domains 1b.	Ceramide synthase 2b.	0.645
creld1	hyou1	ENSPREP00000014602	ENSPREP00000020322	Cysteine-rich with EGF-like domains 1b.	Hypoxia up-regulated 1.	0.435
creld1	nox5	ENSPREP00000014602	ENSPREP00000030481	Cysteine-rich with EGF-like domains 1b.	NADPH oxidase, EF-hand calcium binding domain 5.	0.550
creld1	tada3	ENSPREP00000014602	ENSPREP00000024856	Cysteine-rich with EGF-like domains 1b.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.408