STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam149b1Family with sequence similarity 149 member B1. (796 aa)    
Predicted Functional Partners:
Gm2a
GM2 ganglioside activator.
    
 0.685
neu1
Neuraminidase 1.
  
 
 0.608
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
   
    0.579
ENSPREP00000025909
TBC1 domain family, member 32.
    
 
 0.572
LOC103467672
Uncharacterized protein; Belongs to the glycosyl hydrolase 18 family.
    
 0.563
ctbs
Chitobiase, di-N-acetyl-; Belongs to the glycosyl hydrolase 18 family.
    
 0.563
LOC103465448
Chitinase, acidic.3; Belongs to the glycosyl hydrolase 18 family.
    
 0.563
LOC103465450
Chitinase, acidic.1; Belongs to the glycosyl hydrolase 18 family.
    
 0.563
amdhd2
N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
    
 0.544
dnajc9
DnaJ (Hsp40) homolog, subfamily C, member 9.
   
  
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.