STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvragUV radiation resistance associated gene. (743 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.999
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.996
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 0.996
rubcn
Rubicon autophagy regulator.
    
 0.995
vps16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.682
LOC103463612
RAR-related orphan receptor C a.
      
 0.676
LOC103479274
RAR-related orphan receptor C b.
      
 0.676
gabarapl2
GABA(A) receptor-associated protein like 2.
     
 0.674
GABARAPL2
GABA type A receptor associated protein like 2.
     
 0.674
gabarap
GABA(A) receptor-associated protein b.
     
 0.674
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.