STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf113aRing finger protein 113A. (323 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.992
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.991
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.985
prpf19
Pre-mRNA processing factor 19.
    
 
 0.982
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.982
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.978
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.967
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.964
ENSPREP00000025430
BUD13 homolog.
    
 
 0.955
sf3a2
Splicing factor 3a, subunit 2.
    
 
 0.947
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.