STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (941 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 0.999
sf3b3
Splicing factor 3b, subunit 3.
   
 0.999
sf3b4
Splicing factor 3b, subunit 4.
    
 0.996
sf3b2
Splicing factor 3b, subunit 2.
   
 0.995
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.995
phf5a
PHD finger protein 5A.
   
 0.994
sf3b6
Splicing factor 3b, subunit 6.
   
  0.992
sf3a2
Splicing factor 3a, subunit 2.
   
 0.969
DHX15
DEAH-box helicase 15.
   
 0.851
zmat5
Zinc finger, matrin-type 5.
    
 0.850
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.