STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem117Transmembrane protein 117. (520 aa)    
Predicted Functional Partners:
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.549
NAALADL2
N-acetylated alpha-linked acidic dipeptidase like 2.
      
 0.549
Unc79
Uncharacterized protein.
      
 0.549
tmem161b
Transmembrane protein 161B.
      
 0.539
LOC103464606
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.472
tmem11
Transmembrane protein 11.
      
 0.470
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.455
scaf11
RING-type domain-containing protein.
      
 0.438
VPS13B
Vacuolar protein sorting 13 homolog B.
      
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.