STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479257WH1 domain-containing protein. (360 aa)    
Predicted Functional Partners:
LOC103470410
Homer scaffold protein 1b.
    
0.986
grm1
Glutamate receptor, metabotropic 1a.
    
 0.960
LOC103458356
Glutamate receptor, metabotropic 1b.
    
 0.960
HOMER2
Homer scaffold protein 2.
  
 
 
0.920
HOMER1
Homer scaffold protein 1.
    
0.869
LOC103475526
Glutamate receptor, metabotropic 5a.
    
 0.625
grm5
Glutamate receptor, metabotropic 5b.
    
 0.625
thoc2
THO complex 2.
      
 0.549
ENSPREP00000015327
Uncharacterized protein.
      
 0.527
shank1
SH3 and multiple ankyrin repeat domains 1.
    
 0.500
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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