STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469399Ankyrin 2a, neuronal. (1769 aa)    
Predicted Functional Partners:
rabepk
Rab9 effector protein with kelch motifs.
    
 0.641
CCNG2
Cyclin G2; Belongs to the cyclin family.
   
 0.639
LOC103473919
Cyclin G2; Belongs to the cyclin family.
   
 0.639
ccni
Cyclin I; Belongs to the cyclin family.
    
 0.638
LOC103473938
Shroom family member 3.
    
 0.606
LOC103457724
Ring finger protein 146.
    
 0.604
RNF146
Ring finger protein 146.
    
 0.604
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.601
sptan1
Spectrin alpha, non-erythrocytic 1.
   
 0.550
LOC103456513
Uncharacterized protein.
    
 0.543
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.