STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd2Programmed cell death 2. (361 aa)    
Predicted Functional Partners:
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
   
  
 0.725
ltv1
LTV1 ribosome biogenesis factor.
   
  
 0.654
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.640
LOC103478624
Si:dkey-12j5.1.
   
  
 0.578
pno1
Partner of NOB1 homolog.
   
  
 0.571
fam120b
Family with sequence similarity 120B.
      
 0.549
wdpcp
WD repeat containing planar cell polarity effector.
    
 
 0.545
tsr2
TSR2 ribosome maturation factor.
   
  
 0.538
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.535
znf277
Zinc finger protein 277.
   
 
 0.511
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.