LOC103463388 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103463388

Myosin light chain kinase family, member 4b. (704 aa)

Predicted Functional Partners:

calm2

0.941

LOC103464948

0.938

LOC103465374

0.935

LOC103467339

0.935

prkce

0.907

LOC103476621

0.907

LOC103456858

0.784

LOC103479826

0.784

myl7

0.776

ENSPREP00000024044

0.755

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000024044	LOC103456858	ENSPREP00000024044	ENSPREP00000010045	Uncharacterized protein.	Uncharacterized protein.	0.814
ENSPREP00000024044	LOC103463388	ENSPREP00000024044	ENSPREP00000014911	Uncharacterized protein.	Myosin light chain kinase family, member 4b.	0.755
ENSPREP00000024044	LOC103464948	ENSPREP00000024044	ENSPREP00000001821	Uncharacterized protein.	Myosin, light chain 9a, regulatory.	0.814
ENSPREP00000024044	LOC103479826	ENSPREP00000024044	ENSPREP00000023640	Uncharacterized protein.	Uncharacterized protein.	0.814
ENSPREP00000024044	myl7	ENSPREP00000024044	ENSPREP00000015234	Uncharacterized protein.	Myosin, light chain 7, regulatory.	0.960
LOC103456858	ENSPREP00000024044	ENSPREP00000010045	ENSPREP00000024044	Uncharacterized protein.	Uncharacterized protein.	0.814
LOC103456858	LOC103463388	ENSPREP00000010045	ENSPREP00000014911	Uncharacterized protein.	Myosin light chain kinase family, member 4b.	0.784
LOC103456858	LOC103464948	ENSPREP00000010045	ENSPREP00000001821	Uncharacterized protein.	Myosin, light chain 9a, regulatory.	0.904
LOC103456858	LOC103465374	ENSPREP00000010045	ENSPREP00000024706	Uncharacterized protein.	Uncharacterized protein.	0.986
LOC103456858	LOC103467339	ENSPREP00000010045	ENSPREP00000031613	Uncharacterized protein.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.986
LOC103456858	LOC103479826	ENSPREP00000010045	ENSPREP00000023640	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103456858	calm2	ENSPREP00000010045	ENSPREP00000015904	Uncharacterized protein.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.470
LOC103456858	myl7	ENSPREP00000010045	ENSPREP00000015234	Uncharacterized protein.	Myosin, light chain 7, regulatory.	0.413
LOC103463388	ENSPREP00000024044	ENSPREP00000014911	ENSPREP00000024044	Myosin light chain kinase family, member 4b.	Uncharacterized protein.	0.755
LOC103463388	LOC103456858	ENSPREP00000014911	ENSPREP00000010045	Myosin light chain kinase family, member 4b.	Uncharacterized protein.	0.784
LOC103463388	LOC103464948	ENSPREP00000014911	ENSPREP00000001821	Myosin light chain kinase family, member 4b.	Myosin, light chain 9a, regulatory.	0.938
LOC103463388	LOC103465374	ENSPREP00000014911	ENSPREP00000024706	Myosin light chain kinase family, member 4b.	Uncharacterized protein.	0.935
LOC103463388	LOC103467339	ENSPREP00000014911	ENSPREP00000031613	Myosin light chain kinase family, member 4b.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.935
LOC103463388	LOC103476621	ENSPREP00000014911	ENSPREP00000009501	Myosin light chain kinase family, member 4b.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.907
LOC103463388	LOC103479826	ENSPREP00000014911	ENSPREP00000023640	Myosin light chain kinase family, member 4b.	Uncharacterized protein.	0.784