STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phc1Uncharacterized protein. (198 aa)    
Predicted Functional Partners:
LOC103481889
Chromo domain-containing protein.
    
 0.940
cbx4
Chromobox 4.
    
 0.899
LOC103469229
Chromobox homolog 4 (Pc class homolog, Drosophila).
    
 0.899
rnf2
Ring finger protein 2.
    
 0.877
RING1
Ring finger protein 1.
    
 0.877
cbx8
Chromobox homolog 8b.
    
 0.870
LOC103469230
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.870
PCGF2
Polycomb group ring finger 2.
   
 0.869
ENSPREP00000022294
Bmi1 polycomb ring finger oncogene 1a.
   
 0.869
cbx6
Chromobox homolog 6a.
    
 0.824
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.