STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
setd1aSET domain containing 1A, histone lysine methyltransferase. (2165 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.968
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.968
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.932
LOC103460221
CXXC finger protein 1a.
   
 0.858
cxxc1
CXXC finger protein 1b.
   
 0.858
wdr82
WD repeat domain 82.
   
 0.842
LOC103465138
Uncharacterized protein.
   
 0.842
wdr5
WD repeat domain 5.
   
 0.794
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.786
rps27a
Ribosomal protein S27a.
   
  0.776
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.