rnpc3 protein (Poecilia reticulata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

rnpc3

RNA-binding region (RNP1, RRM) containing 3. (506 aa)

Predicted Functional Partners:

zmat5

0.962

snrpd3

0.949

snrpe

0.948

snrpg

0.945

Snrpf

0.942

sf3b1

0.938

Snrpd2

0.937

sf3b4

0.929

sf3b2

0.925

sf3b5

0.924

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snrpd2	Snrpf	ENSPREP00000005996	ENSPREP00000033403	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein polypeptide F.	0.999
Snrpd2	rnpc3	ENSPREP00000005996	ENSPREP00000015114	Small nuclear ribonucleoprotein Sm D2.	RNA-binding region (RNP1, RRM) containing 3.	0.937
Snrpd2	sf3b1	ENSPREP00000005996	ENSPREP00000029090	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3b, subunit 1.	0.974
Snrpd2	sf3b2	ENSPREP00000005996	ENSPREP00000003704	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3b, subunit 2.	0.995
Snrpd2	sf3b4	ENSPREP00000005996	ENSPREP00000016377	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3b, subunit 4.	0.972
Snrpd2	sf3b5	ENSPREP00000005996	ENSPREP00000013596	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.990
Snrpd2	snrpd3	ENSPREP00000005996	ENSPREP00000011038	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpd2	snrpe	ENSPREP00000005996	ENSPREP00000026678	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Snrpd2	snrpg	ENSPREP00000005996	ENSPREP00000007882	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
Snrpd2	zmat5	ENSPREP00000005996	ENSPREP00000019176	Small nuclear ribonucleoprotein Sm D2.	Zinc finger, matrin-type 5.	0.984
Snrpf	Snrpd2	ENSPREP00000033403	ENSPREP00000005996	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpf	rnpc3	ENSPREP00000033403	ENSPREP00000015114	Small nuclear ribonucleoprotein polypeptide F.	RNA-binding region (RNP1, RRM) containing 3.	0.942
Snrpf	sf3b1	ENSPREP00000033403	ENSPREP00000029090	Small nuclear ribonucleoprotein polypeptide F.	Splicing factor 3b, subunit 1.	0.993
Snrpf	sf3b2	ENSPREP00000033403	ENSPREP00000003704	Small nuclear ribonucleoprotein polypeptide F.	Splicing factor 3b, subunit 2.	0.982
Snrpf	sf3b4	ENSPREP00000033403	ENSPREP00000016377	Small nuclear ribonucleoprotein polypeptide F.	Splicing factor 3b, subunit 4.	0.962
Snrpf	sf3b5	ENSPREP00000033403	ENSPREP00000013596	Small nuclear ribonucleoprotein polypeptide F.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.978
Snrpf	snrpd3	ENSPREP00000033403	ENSPREP00000011038	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpf	snrpe	ENSPREP00000033403	ENSPREP00000026678	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Snrpf	snrpg	ENSPREP00000033403	ENSPREP00000007882	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
Snrpf	zmat5	ENSPREP00000033403	ENSPREP00000019176	Small nuclear ribonucleoprotein polypeptide F.	Zinc finger, matrin-type 5.	0.983