STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdca5Cell division cycle associated 5. (264 aa)    
Predicted Functional Partners:
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.906
smc3
Structural maintenance of chromosomes protein.
   
 0.892
LOC103481872
WAPL cohesin release factor b.
    
 0.877
Rbm20
Matrin-type domain-containing protein.
   
 0.873
pds5a
PDS5 cohesin associated factor A.
    
 0.859
smc1a
Structural maintenance of chromosomes protein.
   
 0.849
LOC103476704
WAPL cohesin release factor a.
    
 0.836
nuf2
UF2 component of NDC80 kinetochore complex.
   
  
 0.822
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.812
cdca3
Si:ch211-69g19.2.
   
  
 0.809
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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