STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fastkd2FAST kinase domains 2. (612 aa)    
Predicted Functional Partners:
Ngrn
Uncharacterized protein.
    
 
 0.789
MTERF1
Mitochondrial transcription termination factor 1.
   
 
 0.769
mterf3
Mitochondrial transcription termination factor 3.
   
 
 0.753
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 
 0.735
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
   
 
 0.714
tfb2m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.713
LOC103462163
Pentatricopeptide repeat domain 1.
    
 
 0.697
rars2
Arginyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.691
lamp2
Lysosomal-associated membrane protein 2.
      
 0.673
LOC103465136
RNA pseudouridine synthase D4.
   
 
 0.664
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.