STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458463RAB GTPase activating protein 1-like 2. (299 aa)    
Predicted Functional Partners:
LOC103474679
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
  0.655
RABGEF1
RAB guanine nucleotide exchange factor 1.
   
  0.655
LOC103470250
Uncharacterized protein.
   
  0.655
LOC103479611
RAB6B, member RAS oncogene family.
    
 0.504
RAB41
RAB41, member RAS oncogene family.
    
 0.504
LOC103463948
RAB6B, member RAS oncogene family a.
    
 0.504
rab6a
RAB6A, member RAS oncogene family.
    
 0.504
rab34
RAB34, member RAS oncogene family a.
    
 0.417
LOC103475607
RAB34, member RAS oncogene family b.
    
 0.417
ENSPREP00000014829
Uncharacterized protein.
    
 0.417
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.