STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitx2Homeobox protein. (312 aa)    
Predicted Functional Partners:
SRF
Serum response factor.
      
 0.596
srf
Serum response factor b.
      
 0.596
c2cd5
C2 calcium dependent domain containing 5.
      
 0.592
LOC103479789
SRY-box transcription factor 1a.
    
 
 0.516
LOC103470287
Southpaw.
      
 0.514
eef2
Tr-type G domain-containing protein.
      
 0.499
tcf7l2
Transcription factor 7 like 2.
    
 
 0.479
LOC103475931
SIX homeobox 7.
   
  
 0.478
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.454
LOC103469601
DAN domain family, member 5.
      
 0.452
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.