LOC103463376 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103463376

Regulator of G protein signaling 5a. (183 aa)

Predicted Functional Partners:

rgs3

0.678

LOC103463548

0.648

LOC103479038

0.645

LOC103463374

0.634

gnat1

0.628

LOC103467179

0.628

LOC103463375

0.604

LOC103462170

0.597

gnb5

0.597

LOC103458452

0.582

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103458452	LOC103462170	ENSPREP00000015705	ENSPREP00000007905	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), beta 5b.	0.716
LOC103458452	LOC103463374	ENSPREP00000015705	ENSPREP00000015440	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 8.	0.602
LOC103458452	LOC103463375	ENSPREP00000015705	ENSPREP00000015418	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 16.	0.555
LOC103458452	LOC103463376	ENSPREP00000015705	ENSPREP00000015410	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 5a.	0.582
LOC103458452	LOC103463548	ENSPREP00000015705	ENSPREP00000017815	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.471
LOC103458452	LOC103479038	ENSPREP00000015705	ENSPREP00000008218	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Regulator of G protein signaling 18.	0.624
LOC103458452	gnb5	ENSPREP00000015705	ENSPREP00000021759	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), beta 5a.	0.716
LOC103458452	rgs3	ENSPREP00000015705	ENSPREP00000023757	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.623
LOC103462170	LOC103458452	ENSPREP00000007905	ENSPREP00000015705	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.716
LOC103462170	LOC103463374	ENSPREP00000007905	ENSPREP00000015440	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 8.	0.448
LOC103462170	LOC103463375	ENSPREP00000007905	ENSPREP00000015418	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 16.	0.730
LOC103462170	LOC103463376	ENSPREP00000007905	ENSPREP00000015410	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 5a.	0.597
LOC103462170	LOC103463548	ENSPREP00000007905	ENSPREP00000017815	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.700
LOC103462170	LOC103467179	ENSPREP00000007905	ENSPREP00000021938	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.689
LOC103462170	LOC103479038	ENSPREP00000007905	ENSPREP00000008218	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 18.	0.579
LOC103462170	gnat1	ENSPREP00000007905	ENSPREP00000005925	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.689
LOC103462170	rgs3	ENSPREP00000007905	ENSPREP00000023757	Guanine nucleotide binding protein (G protein), beta 5b.	Uncharacterized protein.	0.650
LOC103463374	LOC103458452	ENSPREP00000015440	ENSPREP00000015705	Regulator of G protein signaling 8.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.602
LOC103463374	LOC103462170	ENSPREP00000015440	ENSPREP00000007905	Regulator of G protein signaling 8.	Guanine nucleotide binding protein (G protein), beta 5b.	0.448
LOC103463374	LOC103463375	ENSPREP00000015440	ENSPREP00000015418	Regulator of G protein signaling 8.	Regulator of G protein signaling 16.	0.515