STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpgs1Uncharacterized protein. (296 aa)    
Predicted Functional Partners:
LRRC49
Leucine rich repeat containing 49.
    
 0.837
nicn1
Nicolin 1.
    
 0.817
ttll1
Tubulin tyrosine ligase-like family, member 1.
    
 0.799
tpgs2
Tubulin polyglutamylase complex subunit 2.
    
 0.721
ttl
Tubulin tyrosine ligase.
    
 0.650
LOC103479189
RIIa domain-containing protein.
      
 0.650
ttc13
Tetratricopeptide repeat domain 13.
      
 0.650
fbxl13
F-box and leucine-rich repeat protein 13.
   
  
 0.561
ttll5
Tubulin tyrosine ligase-like family, member 5.
    
 0.506
rex1bd
Required for excision 1-B domain containing.
   
  
 0.444
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.