STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc25Tetratricopeptide repeat domain 25. (464 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.885
armc4
Armadillo repeat containing 4.
  
 
 0.862
LOC103464463
Coiled-coil domain containing 114.
   
 
 0.807
efcab1
Uncharacterized protein.
   
 0.802
ccdc151
Uncharacterized protein.
   
 0.800
armc3
Armadillo repeat containing 3.
   
 
 0.704
tekt3
Tektin 3.
   
 
 0.698
cfap45
Cilia and flagella associated protein 45.
   
 
 0.695
tekt4
Tektin 4.
   
 
 0.683
mbd1
Methyl-CpG binding domain protein 1b.
   
 0.670
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.