STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nod1Nucleotide-binding oligomerization domain containing 1. (884 aa)    
Predicted Functional Partners:
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.992
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.937
aamp
Angio-associated, migratory cell protein.
     
 0.635
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.
   
  
 0.599
adcy7
Adenylate cyclase type 7; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.
      
 0.596
noa1
Nitric oxide associated 1.
      
 0.596
tnfrsf18
CD40 molecule, TNF receptor superfamily member 5.
   
  
 0.596
mrc1
Mannose receptor, C type 1a.
      
 0.595
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.588
duox1
Dual oxidase.
   
  
 0.576
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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