ENSPREP00000015789 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000015789

Uncharacterized protein. (57 aa)

Predicted Functional Partners:

apaf1

0.694

appl1

0.629

appl2

0.629

Birc6

0.613

mib2

0.528

cenpn

0.485

LOC103480422

0.479

ripk4

0.479

cenpm

0.451

ENSPREP00000032241

0.445

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Birc6	ENSPREP00000015789	ENSPREP00000027146	ENSPREP00000015789	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.613
Birc6	LOC103480422	ENSPREP00000027146	ENSPREP00000013959	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.	0.828
Birc6	apaf1	ENSPREP00000027146	ENSPREP00000001466	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Apoptotic peptidase activating factor 1.	0.833
Birc6	appl1	ENSPREP00000027146	ENSPREP00000001415	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.528
Birc6	appl2	ENSPREP00000027146	ENSPREP00000027453	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.528
Birc6	mib2	ENSPREP00000027146	ENSPREP00000014990	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.727
Birc6	ripk4	ENSPREP00000027146	ENSPREP00000014341	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Receptor-interacting serine-threonine kinase 4.	0.828
ENSPREP00000015789	Birc6	ENSPREP00000015789	ENSPREP00000027146	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.613
ENSPREP00000015789	ENSPREP00000032241	ENSPREP00000015789	ENSPREP00000032241	Uncharacterized protein.	Uncharacterized protein.	0.445
ENSPREP00000015789	LOC103480422	ENSPREP00000015789	ENSPREP00000013959	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.	0.479
ENSPREP00000015789	apaf1	ENSPREP00000015789	ENSPREP00000001466	Uncharacterized protein.	Apoptotic peptidase activating factor 1.	0.694
ENSPREP00000015789	appl1	ENSPREP00000015789	ENSPREP00000001415	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.629
ENSPREP00000015789	appl2	ENSPREP00000015789	ENSPREP00000027453	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.629
ENSPREP00000015789	cenpm	ENSPREP00000015789	ENSPREP00000023037	Uncharacterized protein.	Proliferation associated nuclear element.	0.451
ENSPREP00000015789	cenpn	ENSPREP00000015789	ENSPREP00000019437	Uncharacterized protein.	Centromere protein N.	0.485
ENSPREP00000015789	mib2	ENSPREP00000015789	ENSPREP00000014990	Uncharacterized protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.528
ENSPREP00000015789	ripk4	ENSPREP00000015789	ENSPREP00000014341	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 4.	0.479
ENSPREP00000032241	ENSPREP00000015789	ENSPREP00000032241	ENSPREP00000015789	Uncharacterized protein.	Uncharacterized protein.	0.445
ENSPREP00000032241	cenpm	ENSPREP00000032241	ENSPREP00000023037	Uncharacterized protein.	Proliferation associated nuclear element.	0.979
ENSPREP00000032241	cenpn	ENSPREP00000032241	ENSPREP00000019437	Uncharacterized protein.	Centromere protein N.	0.984