STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snapc5Small nuclear RNA activating complex, polypeptide 5. (116 aa)    
Predicted Functional Partners:
LOC103458088
Small nuclear RNA activating complex, polypeptide 1b.
    
 0.984
snapc4
Uncharacterized protein.
    
 0.982
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
 0.939
gtf2b
General transcription factor IIB.
    
 0.937
snapc2
Uncharacterized protein.
     
 0.871
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.826
gtf2a1
General transcription factor IIA, 1.
    
  0.826
ENSPREP00000034063
General transcription factor IIA, 1-like.
    
  0.736
brf2
BRF2 RNA polymerase III transcription initiation factor subunit.
     
 0.668
tbpl2
Uncharacterized protein.
    
 0.660
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.