STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad6Mothers against decapentaplegic homolog. (497 aa)    
Predicted Functional Partners:
SMURF2
E3 ubiquitin-protein ligase.
    
 0.979
LOC103468522
E3 ubiquitin-protein ligase.
    
 0.979
smurf1
E3 ubiquitin-protein ligase.
    
 0.979
LOC103469777
Mothers against decapentaplegic homolog.
   
0.948
LOC103471035
Mothers against decapentaplegic homolog.
   
0.947
LOC103466539
Mothers against decapentaplegic homolog.
   
0.947
smad9
Mothers against decapentaplegic homolog.
   
0.947
SMAD3
Mothers against decapentaplegic homolog.
   
0.935
smad7
Mothers against decapentaplegic homolog.
  
  
0.908
bambi
BMP and activin membrane-bound inhibitor (Xenopus laevis) homolog a.
   
 0.727
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.