STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469420Si:dkey-208k4.2. (367 aa)    
Predicted Functional Partners:
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.740
bdp1
SANT domain-containing protein.
    
 0.712
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.604
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.589
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 
 0.586
LOC103458137
TFIIB-type domain-containing protein.
   
 
 0.563
ENSPREP00000017888
BRF1 RNA polymerase III transcription initiation factor subunit b.
   
 
 0.563
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 
 0.559
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.552
gtf3c4
General transcription factor IIIC, polypeptide 4.
    
 0.548
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.