STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccm2CCM2 scaffold protein. (466 aa)    
Predicted Functional Partners:
krit1
KRIT1 ankyrin repeat containing.
    
 
 0.960
pdcd10
Programmed cell death 10b.
    
 
 0.956
map3k3
Mitogen-activated protein kinase kinase kinase 3.
    
 0.841
Map3k2
Protein kinase domain-containing protein.
    
 0.816
LOC103456566
Mitogen-activated protein kinase kinase kinase 22.
    
 0.816
itgb1bp1
Integrin beta 1 binding protein 1.
    
 
 0.790
mtmr9
Myotubularin related protein 9.
   
 0.683
LOC103472140
Striatin, calmodulin binding protein.
     
 0.653
STRN
Striatin.
     
 0.653
efcab2
EF-hand calcium binding domain 2.
    
 0.587
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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