STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcdin3dBCDIN3 domain containing. (251 aa)    
Predicted Functional Partners:
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
    
 
 0.654
zc3h10
Zinc finger CCCH-type containing 10.
   
  
 0.576
LOC103469343
HEXIM P-TEFb complex subunit 1.
    
 
 0.557
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.550
setd7
SET domain containing 7, histone lysine methyltransferase.
    
 
 0.533
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.498
yju2
YJU2 splicing factor homolog.
      
 0.470
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
      
 0.468
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
 
 0.458
eif4b
Eukaryotic translation initiation factor 4Bb.
    
 
 0.445
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.