STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000016064E2F_CC-MB domain-containing protein. (227 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
   
 0.907
ENSPREP00000016035
E2F_TDP domain-containing protein.
 
      0.900
ENSPREP00000032744
Retinoblastoma 1.
   
 0.833
ENSPREP00000023356
Retinoblastoma-like 1 (p107).
   
 0.802
LOC103466787
Retinoblastoma-like 2 (p130).
   
 0.802
ccne1
Cyclin E1; Belongs to the cyclin family.
    
 0.685
ccne2
Cyclin E2; Belongs to the cyclin family.
    
 0.685
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.682
ccna2
Cyclin A2; Belongs to the cyclin family.
   
 0.672
ccna1
Cyclin A1; Belongs to the cyclin family.
   
 0.672
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.