ENSPREP00000016210 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000016210

Uncharacterized protein. (141 aa)

Predicted Functional Partners:

xrcc6

0.677

nhej1

0.671

Xrcc4

0.670

xrcc5

0.639

prkdc

0.597

lig4

0.570

LOC103473172

0.543

pnkp

0.531

aptx

0.523

aplf

0.471

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000016210	LOC103473172	ENSPREP00000016210	ENSPREP00000020178	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 4.	0.543
ENSPREP00000016210	Xrcc4	ENSPREP00000016210	ENSPREP00000006019	Uncharacterized protein.	Uncharacterized protein.	0.670
ENSPREP00000016210	aplf	ENSPREP00000016210	ENSPREP00000006962	Uncharacterized protein.	Uncharacterized protein.	0.471
ENSPREP00000016210	aptx	ENSPREP00000016210	ENSPREP00000006303	Uncharacterized protein.	Aprataxin.	0.523
ENSPREP00000016210	lig4	ENSPREP00000016210	ENSPREP00000010705	Uncharacterized protein.	DNA ligase.	0.570
ENSPREP00000016210	nhej1	ENSPREP00000016210	ENSPREP00000021799	Uncharacterized protein.	Nonhomologous end-joining factor 1.	0.671
ENSPREP00000016210	pnkp	ENSPREP00000016210	ENSPREP00000011491	Uncharacterized protein.	Polynucleotide kinase 3'-phosphatase.	0.531
ENSPREP00000016210	prkdc	ENSPREP00000016210	ENSPREP00000013864	Uncharacterized protein.	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.597
ENSPREP00000016210	xrcc5	ENSPREP00000016210	ENSPREP00000014485	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.639
ENSPREP00000016210	xrcc6	ENSPREP00000016210	ENSPREP00000030954	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.677
LOC103473172	ENSPREP00000016210	ENSPREP00000020178	ENSPREP00000016210	X-ray repair complementing defective repair in Chinese hamster cells 4.	Uncharacterized protein.	0.543
LOC103473172	Xrcc4	ENSPREP00000020178	ENSPREP00000006019	X-ray repair complementing defective repair in Chinese hamster cells 4.	Uncharacterized protein.	0.908
LOC103473172	lig4	ENSPREP00000020178	ENSPREP00000010705	X-ray repair complementing defective repair in Chinese hamster cells 4.	DNA ligase.	0.867
LOC103473172	nhej1	ENSPREP00000020178	ENSPREP00000021799	X-ray repair complementing defective repair in Chinese hamster cells 4.	Nonhomologous end-joining factor 1.	0.737
LOC103473172	prkdc	ENSPREP00000020178	ENSPREP00000013864	X-ray repair complementing defective repair in Chinese hamster cells 4.	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.707
LOC103473172	xrcc5	ENSPREP00000020178	ENSPREP00000014485	X-ray repair complementing defective repair in Chinese hamster cells 4.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.761
LOC103473172	xrcc6	ENSPREP00000020178	ENSPREP00000030954	X-ray repair complementing defective repair in Chinese hamster cells 4.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.796
Xrcc4	ENSPREP00000016210	ENSPREP00000006019	ENSPREP00000016210	Uncharacterized protein.	Uncharacterized protein.	0.670
Xrcc4	LOC103473172	ENSPREP00000006019	ENSPREP00000020178	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 4.	0.908
Xrcc4	aplf	ENSPREP00000006019	ENSPREP00000006962	Uncharacterized protein.	Uncharacterized protein.	0.808