STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCDC2Doublecortin domain containing 2. (348 aa)    
Predicted Functional Partners:
tsc1
TSC complex subunit 1b.
      
 0.643
pcm1
Pericentriolar material 1.
      
 0.630
pot1
Telo_bind domain-containing protein.
    
 
 0.602
alx1
ALX homeobox 1.
      
 0.549
slc12a3
Solute carrier family 12 member 3.
      
 0.543
ENSPREP00000022685
Abelson helper integration site 1.
      
 0.513
LOC103458731
Pericentrin.
      
 0.475
LOC103457290
Estrogen receptor 2a.
      
 0.468
cfap36
Cilia and flagella associated protein 36.
   
  
 0.416
dnaaf4
Dynein axonemal assembly factor 4.
      
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.