STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103470616Un-named hu7912. (1066 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
      
 0.558
surf4
Surfeit 4.
   
 
 0.520
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.471
LOC103463800
Calmegin.
    
 
 0.456
canx
Calnexin.
    
 
 0.456
preb
Prolactin regulatory element binding.
   
 
 0.450
cope
Coatomer protein complex, subunit epsilon.
   
 
 0.448
erp44
Endoplasmic reticulum protein 44.
   
 
 0.406
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.