STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPRDUncharacterized protein. (1945 aa)    
Predicted Functional Partners:
LOC103460066
Uncharacterized protein.
    
 0.715
SLITRK1
SLIT and NTRK like family member 1.
    
 0.643
slitrk2
SLIT and NTRK-like family, member 2.
    
 0.610
LOC103473467
Tyrosine-protein kinase receptor.
   
0.556
ntrk3
Tyrosine-protein kinase receptor.
   
 0.556
LOC103465767
Tyrosine-protein kinase receptor.
   
 0.556
ntrk1
Tyrosine-protein kinase receptor.
   
0.556
ntrk2
Neurotrophic tyrosine kinase, receptor, type 2a.
   
 0.556
grb2
Growth factor receptor-bound protein 2b.
   
 0.547
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
0.535
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.