STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubac2UBA domain containing 2. (353 aa)    
Predicted Functional Partners:
faf2
Fas associated factor family member 2.
    
 
 0.970
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.945
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.920
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.792
FAAP100
FA core complex associated protein 100.
    
 
 0.792
amfr
Autocrine motility factor receptor b.
    
 
 0.637
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.637
emc1
ER membrane protein complex subunit 1.
    
 
 0.622
LOC103465226
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
    
 
 0.595
emc2
ER membrane protein complex subunit 2.
    
 
 0.569
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.