STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LPCAT1Lysophosphatidylcholine acyltransferase 1. (484 aa)    
Predicted Functional Partners:
smpd3
Sphingomyelin phosphodiesterase 3, neutral.
      
 0.644
LOC103478407
Uncharacterized protein.
      
 0.643
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
      
 0.643
smpd4
Sphingomyelin phosphodiesterase 4.
      
 0.643
chpt1
Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.643
LOC103475777
Phospholipase.
  
 
 0.573
pcyt1b
Phosphate cytidylyltransferase 1, choline, beta a.
      
 0.560
smpd1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
      
 0.553
aasdh
Aminoadipate-semialdehyde dehydrogenase.
     
 0.538
pcyt1a
Phosphate cytidylyltransferase 1, choline, alpha a.
      
 0.529
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.