LOC103479750 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103479750

Vav 3 guanine nucleotide exchange factor b. (457 aa)

Predicted Functional Partners:

lrrc4c

0.961

LOC103462729

0.952

ntng1

0.901

LOC103471829

0.708

lrit1

0.705

Lrit3

0.705

LOC103476852

0.705

pidd1

0.581

neo1

0.567

ENSPREP00000019743

0.567

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000019743	LOC103479750	ENSPREP00000019743	ENSPREP00000016634	Uncharacterized protein.	Vav 3 guanine nucleotide exchange factor b.	0.567
ENSPREP00000019743	ntng1	ENSPREP00000019743	ENSPREP00000015277	Uncharacterized protein.	Netrin g1a.	0.567
LOC103462729	LOC103479750	ENSPREP00000004858	ENSPREP00000016634	Leucine rich repeat containing 4C, genome duplicate b.	Vav 3 guanine nucleotide exchange factor b.	0.952
LOC103462729	lrrc4c	ENSPREP00000004858	ENSPREP00000028117	Leucine rich repeat containing 4C, genome duplicate b.	Leucine rich repeat containing 4C, genome duplicate a.	0.901
LOC103462729	ntng1	ENSPREP00000004858	ENSPREP00000015277	Leucine rich repeat containing 4C, genome duplicate b.	Netrin g1a.	0.952
LOC103471829	LOC103476852	ENSPREP00000015068	ENSPREP00000026212	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.507
LOC103471829	LOC103479750	ENSPREP00000015068	ENSPREP00000016634	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Vav 3 guanine nucleotide exchange factor b.	0.708
LOC103471829	Lrit3	ENSPREP00000015068	ENSPREP00000018453	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Uncharacterized protein.	0.438
LOC103471829	lrit1	ENSPREP00000015068	ENSPREP00000001740	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.506
LOC103471829	ntng1	ENSPREP00000015068	ENSPREP00000015277	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Netrin g1a.	0.708
LOC103471829	pidd1	ENSPREP00000015068	ENSPREP00000017422	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	P53-induced death domain protein 1.	0.435
LOC103476852	LOC103471829	ENSPREP00000026212	ENSPREP00000015068	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.507
LOC103476852	LOC103479750	ENSPREP00000026212	ENSPREP00000016634	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Vav 3 guanine nucleotide exchange factor b.	0.705
LOC103476852	Lrit3	ENSPREP00000026212	ENSPREP00000018453	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Uncharacterized protein.	0.406
LOC103476852	ntng1	ENSPREP00000026212	ENSPREP00000015277	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Netrin g1a.	0.705
LOC103476852	pidd1	ENSPREP00000026212	ENSPREP00000017422	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	P53-induced death domain protein 1.	0.435
LOC103479750	ENSPREP00000019743	ENSPREP00000016634	ENSPREP00000019743	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.567
LOC103479750	LOC103462729	ENSPREP00000016634	ENSPREP00000004858	Vav 3 guanine nucleotide exchange factor b.	Leucine rich repeat containing 4C, genome duplicate b.	0.952
LOC103479750	LOC103471829	ENSPREP00000016634	ENSPREP00000015068	Vav 3 guanine nucleotide exchange factor b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.708
LOC103479750	LOC103476852	ENSPREP00000016634	ENSPREP00000026212	Vav 3 guanine nucleotide exchange factor b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.705