STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000016643Tocopherol (alpha) transfer protein. (295 aa)    
Predicted Functional Partners:
GPX4
Glutathione peroxidase 4.
   
  
 0.635
trit1
tRNA isopentenyltransferase 1; Belongs to the IPP transferase family.
      
 0.477
LOC103465958
Iron-responsive element binding protein 2; Belongs to the aconitase/IPM isomerase family.
      
 0.449
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
      
 0.448
pvalb
Parvalbumin 7; Belongs to the parvalbumin family.
   
  
 0.428
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 0.427
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.426
LOC103479192
Transferrin receptor 1a.
   
  
 0.423
LOC103465209
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.418
sdr16c5
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.418
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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